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1 Single Condition Analysis

1.1 CCI - Cell Cell Interaction

1.1.1 Single Condition Cell Cell Interaction Plot (CCI)

Here, the cell-cell interaction is provided for each phenotype separately

1.2 GCI - Gene Cell Interaction

1.2.1 PCA CGI

Here, a Principal Component Analysis (PCA) was done using the cell-gene interaction topological measures.High ranked observations (>=2\(\sigma^{2}\)) are labeled and each measure contribution is placed in the coordinate system

## $CTR_ggi

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## $EXP_ggi

1.2.2 PCA GCI Table

1.2.3 Most significant deregulated pathway per topological measure

Generates a heatmap of the most significant differentially active KEGG-pathways based on the top 100 deregulated genes

1.3 LR analysis data